Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00742.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 552

Length: 921
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.25


Found at i:849 original size:9 final size:9

Alignment explanation


    Indices: 818--869  Score: 50
    Period size: 9  Copynumber: 5.8  Consensus size: 9

        808 GAAGTAGAAG

                     
        818 ATGATGATA
          1 ATGATGATA

             *      *
        827 ACGATGATG
          1 ATGATGATA

            *        
        836 TTGATGATA
          1 ATGATGATA

                 *  *
        845 ATGATAATG
          1 ATGATGATA

                   * 
        854 ATGATGACA
          1 ATGATGATA

                   
        863 ATGATGA
          1 ATGATGA

        870 GGGCAACCAT


Statistics
Matches: 32,  Mismatches: 11, Indels: 0
        0.74            0.26        0.00

Matches are distributed among these distances:
   9   32  1.00

ACGTcount: A:0.40, C:0.04, G:0.25, T:0.31


Consensus pattern (9 bp):   
ATGATGATA

Found at i:865 original size:18 final size:18

Alignment explanation


    Indices: 817--867  Score: 66
    Period size: 18  Copynumber: 2.8  Consensus size: 18

        807 TGAAGTAGAA

                       *   *  
        817 GATGATGATAACGATGAT
          1 GATGATGATAATGATAAT

             *                
        835 GTTGATGATAATGATAAT
          1 GATGATGATAATGATAAT

                    *      
        853 GATGATGACAATGAT
          1 GATGATGATAATGAT

        868 GAGGGCAACC


Statistics
Matches: 28,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  18   28  1.00

ACGTcount: A:0.39, C:0.04, G:0.25, T:0.31


Consensus pattern (18 bp):   
GATGATGATAATGATAAT
Done.