Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00750.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 898

Length: 1498
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28


Found at i:238 original size:16 final size:17

Alignment explanation


    Indices: 212--250  Score: 53
    Period size: 16  Copynumber: 2.4  Consensus size: 17

        202 CTAAATATGA

                *        *   
        212 TGAGTATTGGAAGGCAC
          1 TGAGAATTGGAAGCCAC

                             
        229 -GAGAATTGGAAGCCAC
          1 TGAGAATTGGAAGCCAC

                  
        245 TGAGAA
          1 TGAGAA

        251 CCTGAACAAG


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  16   14  0.74
  17    5  0.26

ACGTcount: A:0.36, C:0.13, G:0.33, T:0.18


Consensus pattern (17 bp):   
TGAGAATTGGAAGCCAC
Done.