Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00755.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4296
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.31


Found at i:3797 original size:43 final size:43

Alignment explanation


    Indices: 3729--3885  Score: 185
    Period size: 43  Copynumber: 3.7  Consensus size: 43

       3719 AGCTCATACA

                                        *               
       3729 ATGCCAATGTCCCAGACGTGGTCTTACATGTAAAC-AAATATTG
          1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAACAAAATA-TG

               *  *          **               *        
       3772 ATGGCATTGTCCCAGACAAGGTCTTACACG-AAATAAAATATG
          1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAACAAAATATG

                                                    *  * 
       3814 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCATAAGT-CG
          1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAA-CA-AAATATG

                   *                    
       3858 ATGCCAACGTCCCAGACGTGGTCTTACA
          1 ATGCCAATGTCCCAGACGTGGTCTTACA

       3886 TGAAAATACA


Statistics
Matches: 96,  Mismatches: 14, Indels: 7
        0.82            0.12        0.06

Matches are distributed among these distances:
  42   31  0.32
  43   33  0.34
  44   29  0.30
  45    3  0.03

ACGTcount: A:0.32, C:0.24, G:0.20, T:0.25


Consensus pattern (43 bp):   
ATGCCAATGTCCCAGACGTGGTCTTACACGTAAACAAAATATG

Found at i:3872 original size:44 final size:43

Alignment explanation


    Indices: 3729--3885  Score: 194
    Period size: 42  Copynumber: 3.7  Consensus size: 43

       3719 AGCTCATACA

                                        *               
       3729 ATGCCAATGTCCCAGACGTGGTCTTACATGTAAA-CAAATATTG
          1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCAAA-ATTG

               *  *          **                         
       3772 ATGGCATTGTCCCAGACAAGGTCTTACACG-AAAT-AAAATATG
          1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCAAAAT-TG

                                                    * * 
       3814 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCATAAGTCG
          1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCA-AAATTG

                   *                    
       3858 ATGCCAACGTCCCAGACGTGGTCTTACA
          1 ATGCCAATGTCCCAGACGTGGTCTTACA

       3886 TGAAAATACA


Statistics
Matches: 97,  Mismatches: 12, Indels: 9
        0.82            0.10        0.08

Matches are distributed among these distances:
  41    2  0.02
  42   34  0.35
  43   29  0.30
  44   29  0.30
  45    3  0.03

ACGTcount: A:0.32, C:0.24, G:0.20, T:0.25


Consensus pattern (43 bp):   
ATGCCAATGTCCCAGACGTGGTCTTACACGTAAATCAAAATTG
Done.