Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00759.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 553

Length: 922
ACGTcount: A:0.29, C:0.36, G:0.15, T:0.21


Found at i:172 original size:39 final size:39

Alignment explanation


    Indices: 128--214  Score: 120
    Period size: 39  Copynumber: 2.2  Consensus size: 39

        118 CACTCCTCCA

                    **                   *     *   
        128 CCTTCAACTTCACCACCACCTACAACTTCCGCACCGCCT
          1 CCTTCAACAACACCACCACCTACAACTTCAGCACCACCT

                       *  *                        
        167 CCTTCAACAACCCCTCCACCTACAACTTCAGCACCACCT
          1 CCTTCAACAACACCACCACCTACAACTTCAGCACCACCT

                     
        206 CCTTCAACA
          1 CCTTCAACA

        215 GCAACGCCTC


Statistics
Matches: 42,  Mismatches: 6, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  39   42  1.00

ACGTcount: A:0.26, C:0.51, G:0.03, T:0.20


Consensus pattern (39 bp):   
CCTTCAACAACACCACCACCTACAACTTCAGCACCACCT
Done.