Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00768.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1902
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.25


Found at i:510 original size:3 final size:3

Alignment explanation


    Indices: 504--543  Score: 80
    Period size: 3  Copynumber: 13.3  Consensus size: 3

        494 TAGCAAAGAA

                                                                 
        504 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
          1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G

        544 GGAAACATGG


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   37  1.00

ACGTcount: A:0.33, C:0.00, G:0.35, T:0.33


Consensus pattern (3 bp):   
GAT

Found at i:1782 original size:10 final size:10

Alignment explanation


    Indices: 1767--1795  Score: 51
    Period size: 10  Copynumber: 3.0  Consensus size: 10

       1757 TTCCAATTAA

                      
       1767 TTTCTTTTTT
          1 TTTCTTTTTT

                      
       1777 TTTCTTTTTT
          1 TTTCTTTTTT

                      
       1787 TTT-TTTTTT
          1 TTTCTTTTTT

       1796 GCCGTATGAG


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
   9    6  0.32
  10   13  0.68

ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93


Consensus pattern (10 bp):   
TTTCTTTTTT
Done.