Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00780.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 544

Length: 908
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.30


Found at i:674 original size:13 final size:13

Alignment explanation


    Indices: 656--680  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        646 CAAATTTGAT

                         
        656 ATTTAAAAAATTG
          1 ATTTAAAAAATTG

                        
        669 ATTTAAAAAATT
          1 ATTTAAAAAATT

        681 AATCAATGAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40


Consensus pattern (13 bp):   
ATTTAAAAAATTG

Found at i:748 original size:28 final size:28

Alignment explanation


    Indices: 708--762  Score: 76
    Period size: 28  Copynumber: 2.0  Consensus size: 28

        698 TAAAATTAAA

                           *             
        708 TAAAAAAAT-AAAAAGTTAAAAGTAAAAG
          1 TAAAAAAATAAAAAAATTAAAAG-AAAAG

                 *                     
        736 TAAAAGAATAAAAAAATTAAAAGAAAA
          1 TAAAAAAATAAAAAAATTAAAAGAAAA

        763 TATTGTTTTC


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  28   12  0.50
  29   12  0.50

ACGTcount: A:0.75, C:0.00, G:0.09, T:0.16


Consensus pattern (28 bp):   
TAAAAAAATAAAAAAATTAAAAGAAAAG
Done.