Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00781.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1685
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35


Found at i:1376 original size:32 final size:32

Alignment explanation


    Indices: 1334--1394  Score: 79
    Period size: 32  Copynumber: 1.9  Consensus size: 32

       1324 TAATTAATTA

                           *    *            
       1334 GTTATCAAATT-AATTTAATTAATTTATAATGG
          1 GTTATCAAATTCAA-ATAATCAATTTATAATGG

                 *                       
       1366 GTTATTAAATTCAAATAATCAATTTATAA
          1 GTTATCAAATTCAAATAATCAATTTATAA

       1395 GTTTATGATG


Statistics
Matches: 25,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  32   23  0.92
  33    2  0.08

ACGTcount: A:0.44, C:0.05, G:0.07, T:0.44


Consensus pattern (32 bp):   
GTTATCAAATTCAAATAATCAATTTATAATGG
Done.