Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00805.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3648
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.30


Found at i:2586 original size:12 final size:12

Alignment explanation


    Indices: 2569--2595  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       2559 TGTCTATGGC

                        
       2569 AAAAAAAAAAGA
          1 AAAAAAAAAAGA

                        
       2581 AAAAAAAAAAGA
          1 AAAAAAAAAAGA

               
       2593 AAA
          1 AAA

       2596 GAAATAGAAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00


Consensus pattern (12 bp):   
AAAAAAAAAAGA

Found at i:2700 original size:2 final size:2

Alignment explanation


    Indices: 2693--2723  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       2683 TTCATGTTTT

                                                          
       2693 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       2724 TTAATCTTGC


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.