Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00806.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1981
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30


Found at i:389 original size:18 final size:18

Alignment explanation


    Indices: 357--407  Score: 68
    Period size: 18  Copynumber: 2.8  Consensus size: 18

        347 ATACCCATTT

                 *            
        357 CTCTCCATC-TTTCTTTC
          1 CTCTCTATCTTTTCTTTC

                              
        374 CTCTCTATCTTTTCTTTC
          1 CTCTCTATCTTTTCTTTC

                       *    
        392 CTCTCTTATCTCTTCT
          1 CTCTC-TATCTTTTCT

        408 GTGCCCTTTG


Statistics
Matches: 30,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    8  0.27
  18   13  0.43
  19    9  0.30

ACGTcount: A:0.06, C:0.37, G:0.00, T:0.57


Consensus pattern (18 bp):   
CTCTCTATCTTTTCTTTC
Done.