Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00814.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 574

Length: 957
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34


Found at i:881 original size:81 final size:81

Alignment explanation


    Indices: 746--901  Score: 294
    Period size: 81  Copynumber: 1.9  Consensus size: 81

        736 TGACAGGGTC

                                                                       *     
        746 GGATCACATTATCAAGTAGGTTCCTATCCTTGTATATACATACATCATCTAATTATATAGTTTTA
          1 GGATCACATTATCAAGTAGGTTCCTATCCTTGTATATACATACATCATCTAATTATATAATTTTA

             *              
        811 TTCATTTCAGCATGTT
         66 TCCATTTCAGCATGTT

                                                                             
        827 GGATCACATTATCAAGTAGGTTCCTATCCTTGTATATACATACATCATCTAATTATATAATTTTA
          1 GGATCACATTATCAAGTAGGTTCCTATCCTTGTATATACATACATCATCTAATTATATAATTTTA

                      
        892 TCCATTTCAG
         66 TCCATTTCAG

        902 TATGCTATTG


Statistics
Matches: 73,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  81   73  1.00

ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41


Consensus pattern (81 bp):   
GGATCACATTATCAAGTAGGTTCCTATCCTTGTATATACATACATCATCTAATTATATAATTTTA
TCCATTTCAGCATGTT
Done.