Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00828.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3346
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28


Found at i:33 original size:2 final size:2

Alignment explanation


    Indices: 28--72  Score: 90
    Period size: 2  Copynumber: 22.5  Consensus size: 2

         18 AAACCCATTG

                                                                          
         28 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

                
         70 TC T
          1 TC T

         73 GTGAAATAAC


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   43  1.00

ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51


Consensus pattern (2 bp):   
TC

Found at i:115 original size:15 final size:15

Alignment explanation


    Indices: 95--124  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

         85 CAGTTTCAAA

                           
         95 GTGTTGCCTTTTTTT
          1 GTGTTGCCTTTTTTT

                           
        110 GTGTTGCCTTTTTTT
          1 GTGTTGCCTTTTTTT

        125 TTTCTTCTTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.00, C:0.13, G:0.20, T:0.67


Consensus pattern (15 bp):   
GTGTTGCCTTTTTTT
Done.