Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00829.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6068
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37


Found at i:5064 original size:16 final size:16

Alignment explanation


    Indices: 5043--5080  Score: 51
    Period size: 16  Copynumber: 2.4  Consensus size: 16

       5033 AAAGTGTGCA

                             
       5043 TTCTATCAT-TATTTTG
          1 TTCTAT-ATGTATTTTG

                  *         
       5059 TTCTATTTGTATTTTG
          1 TTCTATATGTATTTTG

                  
       5075 TTCTAT
          1 TTCTAT

       5081 TTCTGGTGTA


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  15    1  0.05
  16   19  0.95

ACGTcount: A:0.16, C:0.11, G:0.08, T:0.66


Consensus pattern (16 bp):   
TTCTATATGTATTTTG

Found at i:5081 original size:16 final size:16

Alignment explanation


    Indices: 5052--5082  Score: 62
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       5042 ATTCTATCAT

                            
       5052 TATTTTGTTCTATTTG
          1 TATTTTGTTCTATTTG

                           
       5068 TATTTTGTTCTATTT
          1 TATTTTGTTCTATTT

       5083 CTGGTGTAGT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.13, C:0.06, G:0.10, T:0.71


Consensus pattern (16 bp):   
TATTTTGTTCTATTTG
Done.