Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00829.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3449
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.36


Found at i:3329 original size:16 final size:16

Alignment explanation


    Indices: 3308--3345  Score: 51
    Period size: 16  Copynumber: 2.4  Consensus size: 16

       3298 AAAGTGTGCA

                             
       3308 TTCTATCAT-TATTTTG
          1 TTCTAT-ATGTATTTTG

                  *         
       3324 TTCTATTTGTATTTTG
          1 TTCTATATGTATTTTG

                  
       3340 TTCTAT
          1 TTCTAT

       3346 TTCTGGTGTA


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  15    1  0.05
  16   19  0.95

ACGTcount: A:0.16, C:0.11, G:0.08, T:0.66


Consensus pattern (16 bp):   
TTCTATATGTATTTTG

Found at i:3346 original size:16 final size:16

Alignment explanation


    Indices: 3317--3347  Score: 62
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       3307 ATTCTATCAT

                            
       3317 TATTTTGTTCTATTTG
          1 TATTTTGTTCTATTTG

                           
       3333 TATTTTGTTCTATTT
          1 TATTTTGTTCTATTT

       3348 CTGGTGTAGT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.13, C:0.06, G:0.10, T:0.71


Consensus pattern (16 bp):   
TATTTTGTTCTATTTG
Done.