Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00829.C3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2093
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33


Found at i:1973 original size:16 final size:16

Alignment explanation


    Indices: 1952--1989  Score: 51
    Period size: 16  Copynumber: 2.4  Consensus size: 16

       1942 AAAGTGTGCA

                             
       1952 TTCTATCAT-TATTTTG
          1 TTCTAT-ATGTATTTTG

                  *         
       1968 TTCTATTTGTATTTTG
          1 TTCTATATGTATTTTG

                  
       1984 TTCTAT
          1 TTCTAT

       1990 TTCTGGTGTA


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  15    1  0.05
  16   19  0.95

ACGTcount: A:0.16, C:0.11, G:0.08, T:0.66


Consensus pattern (16 bp):   
TTCTATATGTATTTTG

Found at i:1990 original size:16 final size:16

Alignment explanation


    Indices: 1961--1991  Score: 62
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       1951 ATTCTATCAT

                            
       1961 TATTTTGTTCTATTTG
          1 TATTTTGTTCTATTTG

                           
       1977 TATTTTGTTCTATTT
          1 TATTTTGTTCTATTT

       1992 CTGGTGTAGT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.13, C:0.06, G:0.10, T:0.71


Consensus pattern (16 bp):   
TATTTTGTTCTATTTG
Done.