Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00838.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2985
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37


Found at i:2910 original size:19 final size:20

Alignment explanation


    Indices: 2879--2923  Score: 74
    Period size: 19  Copynumber: 2.3  Consensus size: 20

       2869 CGGAAAATGA

                              * 
       2879 TTTCTGAAAAATGATTTATT
          1 TTTCTGAAAAATGATTTACT

                                
       2899 TTTCTG-AAAATGATTTACT
          1 TTTCTGAAAAATGATTTACT

                  
       2918 TTTCTG
          1 TTTCTG

       2924 GTGTTTGTAT


Statistics
Matches: 24,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  19   18  0.75
  20    6  0.25

ACGTcount: A:0.29, C:0.09, G:0.11, T:0.51


Consensus pattern (20 bp):   
TTTCTGAAAAATGATTTACT
Done.