Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00859.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2376
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34


Found at i:89 original size:6 final size:6

Alignment explanation


    Indices: 80--104  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

         70 AGTTTCCTTT

                                         
         80 TTTTTC TTTTTC TTTTTC TTTTTC T
          1 TTTTTC TTTTTC TTTTTC TTTTTC T

        105 GTTTGGACGA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84


Consensus pattern (6 bp):   
TTTTTC

Found at i:2083 original size:23 final size:24

Alignment explanation


    Indices: 2041--2085  Score: 74
    Period size: 23  Copynumber: 1.9  Consensus size: 24

       2031 TTGTATTAAA

                           *        
       2041 TATAATATCATATATTTATATGTG
          1 TATAATATCATATATATATATGTG

                                  
       2065 TATAATA-CATATATATATATG
          1 TATAATATCATATATATATATG

       2086 AACCATATCA


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  23   13  0.65
  24    7  0.35

ACGTcount: A:0.42, C:0.04, G:0.07, T:0.47


Consensus pattern (24 bp):   
TATAATATCATATATATATATGTG
Done.