Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00871.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 576

Length: 961
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35


Found at i:889 original size:16 final size:18

Alignment explanation


    Indices: 862--897  Score: 58
    Period size: 17  Copynumber: 2.1  Consensus size: 18

        852 CCAATAGCAC

                              
        862 TTTTTCTGTTCT-TTTTT
          1 TTTTTCTGTTCTCTTTTT

                              
        879 TTTTTCT-TTCTCTTTTT
          1 TTTTTCTGTTCTCTTTTT

              
        896 TT
          1 TT

        898 GTATATGTAG


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  16    4  0.22
  17   14  0.78

ACGTcount: A:0.00, C:0.14, G:0.03, T:0.83


Consensus pattern (18 bp):   
TTTTTCTGTTCTCTTTTT

Done.