Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00892.N5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2654
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.38


Found at i:2196 original size:25 final size:25

Alignment explanation


    Indices: 2168--2242  Score: 87
    Period size: 25  Copynumber: 3.0  Consensus size: 25

       2158 TCCGCATCGT

                      *              
       2168 CGTTGGCAGCTCTATGCTACATCTC
          1 CGTTGGCAGCCCTATGCTACATCTC

                    *    *           
       2193 CGTTGGCATCCCTCTGCTACATCTC
          1 CGTTGGCAGCCCTATGCTACATCTC

               *    *    *      *    
       2218 CGTCGGCATCCCTCTGCTACTTCTC
          1 CGTTGGCAGCCCTATGCTACATCTC

       2243 TAGTTTTCTG


Statistics
Matches: 45,  Mismatches: 5, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  25   45  1.00

ACGTcount: A:0.12, C:0.39, G:0.17, T:0.32


Consensus pattern (25 bp):   
CGTTGGCAGCCCTATGCTACATCTC
Done.