Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00914.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2209
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31


Found at i:2015 original size:17 final size:17

Alignment explanation


    Indices: 1993--2027  Score: 61
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       1983 GAAACTTTAT

                             
       1993 GCTTGTTAATGGCGACA
          1 GCTTGTTAATGGCGACA

                        *    
       2010 GCTTGTTAATGGTGACA
          1 GCTTGTTAATGGCGACA

             
       2027 G
          1 G

       2028 TGCCGGGCGT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.23, C:0.14, G:0.31, T:0.31


Consensus pattern (17 bp):   
GCTTGTTAATGGCGACA
Done.