Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00917.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2777
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33


Found at i:2176 original size:63 final size:64

Alignment explanation


    Indices: 2026--2186  Score: 182
    Period size: 63  Copynumber: 2.5  Consensus size: 64

       2016 AATCGGTCAC

                   *                       *            *       *            
       2026 CTAGCTTGTGCTACAAGTGTGGTGAAGGAGGGCACTTTGCACATGAATGCACTACTGGTACTGCA
          1 CTAGCTTATGCTACAAGTGT-G-G-AGGAGGACACTTTGCACATCAATGCACCACTGG-A-TGCA

            *   
       2091 TCAT
         61 GCAT

                *    *                                                       
       2095 CTAGTTTATACTACAAGTGTGGAGGAGGACACTTTGCACGA-CAATGCACCACTGG-TGCAGCAT
          1 CTAGCTTATGCTACAAGTGTGGAGGAGGACACTTTGCAC-ATCAATGCACCACTGGATGCAGCAT

                                    *    
       2158 CTAGCTTATGCTACAAGTGTGGAGAAGGA
          1 CTAGCTTATGCTACAAGTGTGGAGGAGGA

       2187 GAACACTCTA


Statistics
Matches: 81,  Mismatches: 10, Indels: 8
        0.82            0.10        0.08

Matches are distributed among these distances:
  63   33  0.41
  66   28  0.35
  67    2  0.02
  68    1  0.01
  69   17  0.21

ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25


Consensus pattern (64 bp):   
CTAGCTTATGCTACAAGTGTGGAGGAGGACACTTTGCACATCAATGCACCACTGGATGCAGCAT

Found at i:2187 original size:66 final size:66

Alignment explanation


    Indices: 2026--2193  Score: 191
    Period size: 66  Copynumber: 2.5  Consensus size: 66

       2016 AATCGGTCAC

                   *                       *            *       *            
       2026 CTAGCTTGTGCTACAAGTGTGGTGAAGGAGGGCACTTTGCACATGAATGCACTACTGGTACTGCA
          1 CTAGCTTATGCTACAAGTGTGG-GAAGGAGGACACTTTGCACATCAATGCACCACTGG-A-TGCA

            *   
       2091 TCAT
         63 GCAT

                *    *                                                       
       2095 CTAGTTTATACTACAAGTGT-GG-AGGAGGACACTTTGCACGA-CAATGCACCACTGG-TGCAGC
          1 CTAGCTTATGCTACAAGTGTGGGAAGGAGGACACTTTGCAC-ATCAATGCACCACTGGATGCAGC

              
       2156 AT
         65 AT

                                          *     
       2158 CTAGCTTATGCTACAAGTGTGGAGAAGGAGAACACT
          1 CTAGCTTATGCTACAAGTGTGG-GAAGGAGGACACT

       2194 CTATTCATGA


Statistics
Matches: 85,  Mismatches: 10, Indels: 11
        0.80            0.09        0.10

Matches are distributed among these distances:
  63   25  0.29
  64    1  0.01
  65    1  0.01
  66   38  0.45
  67    2  0.02
  68    1  0.01
  69   17  0.20

ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25


Consensus pattern (66 bp):   
CTAGCTTATGCTACAAGTGTGGGAAGGAGGACACTTTGCACATCAATGCACCACTGGATGCAGCA
T

Done.