Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00922.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3563
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31


Found at i:1346 original size:12 final size:12

Alignment explanation


    Indices: 1329--1355  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       1319 AGATTTATGT

                        
       1329 TCATAGTTCGGG
          1 TCATAGTTCGGG

                        
       1341 TCATAGTTCGGG
          1 TCATAGTTCGGG

               
       1353 TCA
          1 TCA

       1356 ATTAATAAAC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.19, C:0.19, G:0.30, T:0.33


Consensus pattern (12 bp):   
TCATAGTTCGGG
Done.