Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00948.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 558

Length: 930
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29


Found at i:433 original size:24 final size:24

Alignment explanation


    Indices: 392--439  Score: 60
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        382 TTCAGACTCA

                  *     *           
        392 TTACTTGGGGCTGATGAGGATGAG
          1 TTACTTCGGGCTCATGAGGATGAG

                         *     *    
        416 TTACTTCGGGCTCCTGAGGGTGAG
          1 TTACTTCGGGCTCATGAGGATGAG

        440 GAATCCATTG


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  24   20  1.00

ACGTcount: A:0.17, C:0.15, G:0.40, T:0.29


Consensus pattern (24 bp):   
TTACTTCGGGCTCATGAGGATGAG
Done.