Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00967.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 735

Length: 1225
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36


Found at i:564 original size:20 final size:20

Alignment explanation


    Indices: 539--578  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        529 GTGTCGAGAT

                                
        539 GTTTAAGAACGGGTAAATGC
          1 GTTTAAGAACGGGTAAATGC

                                
        559 GTTTAAGAACGGGTAAATGC
          1 GTTTAAGAACGGGTAAATGC

        579 ATACAGCCAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.35, C:0.10, G:0.30, T:0.25


Consensus pattern (20 bp):   
GTTTAAGAACGGGTAAATGC
Done.