Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00969.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2652
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28


Found at i:1167 original size:108 final size:108

Alignment explanation


    Indices: 1028--1233  Score: 317
    Period size: 108  Copynumber: 1.9  Consensus size: 108

       1018 GATGAAGGGG

                                                 *                           
       1028 AAGATGCAACTGTTTTGGAGAATGATAATGAAAAAAATTCTGCTGAAACTGAACTGGCAGATAAT
          1 AAGATGCAACTGTTTTGGAGAATGATAATGAAAAAAAATCTGCTGAAACTGAACTGGCAGATAAT

                *              *                       
       1093 GTACTTGCAGAACCTGATAGGAGCCCCAAGATATGTAATTTGA
         66 GTACATGCAGAACCTGATAAGAGCCCCAAGATATGTAATTTGA

                   *                                                    *   *
       1136 AAGATGCGACTGTTCTT-GAGAA-GTATAATGAAAAAAAATCTGCTGAAACTGAACTGGCTGATG
          1 AAGATGCAACTGTT-TTGGAGAATG-ATAATGAAAAAAAATCTGCTGAAACTGAACTGGCAGATA

                                       *       
       1199 ATGTACATGCAGAACCTGATAAGAGCCTCAAGATA
         64 ATGTACATGCAGAACCTGATAAGAGCCCCAAGATA

       1234 CACCCTCGTG


Statistics
Matches: 89,  Mismatches: 7, Indels: 4
        0.89            0.07        0.04

Matches are distributed among these distances:
 107    1  0.01
 108   86  0.97
 109    2  0.02

ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25


Consensus pattern (108 bp):   
AAGATGCAACTGTTTTGGAGAATGATAATGAAAAAAAATCTGCTGAAACTGAACTGGCAGATAAT
GTACATGCAGAACCTGATAAGAGCCCCAAGATATGTAATTTGA
Done.