Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00971.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3044
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37


Found at i:1384 original size:63 final size:63

Alignment explanation


    Indices: 1306--1433  Score: 256
    Period size: 63  Copynumber: 2.0  Consensus size: 63

       1296 CTTTGATATA

                                                                           
       1306 TTGCTGAAACTTATTTATCAGAAAATCTATTCTAAGTTCACTAATAATTTTGTACTCTTGGTC
          1 TTGCTGAAACTTATTTATCAGAAAATCTATTCTAAGTTCACTAATAATTTTGTACTCTTGGTC

                                                                           
       1369 TTGCTGAAACTTATTTATCAGAAAATCTATTCTAAGTTCACTAATAATTTTGTACTCTTGGTC
          1 TTGCTGAAACTTATTTATCAGAAAATCTATTCTAAGTTCACTAATAATTTTGTACTCTTGGTC

              
       1432 TT
          1 TT

       1434 AGCAATACCG


Statistics
Matches: 65,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  63   65  1.00

ACGTcount: A:0.30, C:0.16, G:0.11, T:0.44


Consensus pattern (63 bp):   
TTGCTGAAACTTATTTATCAGAAAATCTATTCTAAGTTCACTAATAATTTTGTACTCTTGGTC
Done.