Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00973.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6042
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.31


Found at i:2714 original size:37 final size:36

Alignment explanation


    Indices: 2673--2769  Score: 88
    Period size: 36  Copynumber: 2.6  Consensus size: 36

       2663 CATCAGTTAG

                               * *                
       2673 TATAACAGTAAGATTTGCTTAGTTAAGC-TCTACTCAA
          1 TATAA-AGTAAGATTTGCTCAATTAAGCTTC-ACTCAA

                 *   *             *       *   *
       2710 TATAAGGTATGATTTGCTCAATTGAGCTTCATTCAG
          1 TATAAAGTAAGATTTGCTCAATTAAGCTTCACTCAA

                                    
       2746 TATAATAGTAAGATTTGGCTCAAT
          1 TATAA-AGTAAGATTT-GCTCAAT

       2770 AGAACATACT


Statistics
Matches: 48,  Mismatches: 9, Indels: 5
        0.77            0.15        0.08

Matches are distributed among these distances:
  36   26  0.54
  37   15  0.31
  38    7  0.15

ACGTcount: A:0.33, C:0.13, G:0.16, T:0.37


Consensus pattern (36 bp):   
TATAAAGTAAGATTTGCTCAATTAAGCTTCACTCAA

Found at i:3982 original size:24 final size:24

Alignment explanation


    Indices: 3955--4000  Score: 76
    Period size: 24  Copynumber: 1.9  Consensus size: 24

       3945 CATATGTCTT

                                     
       3955 TTCATAGTT-AGATACAAATGCATA
          1 TTCATA-TTCAGATACAAATGCATA

                                  
       3979 TTCATATTCAGATACAAATGCA
          1 TTCATATTCAGATACAAATGCA

       4001 AACACAGATC


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  23    2  0.10
  24   19  0.90

ACGTcount: A:0.41, C:0.15, G:0.11, T:0.33


Consensus pattern (24 bp):   
TTCATATTCAGATACAAATGCATA
Done.