Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00990.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 672

Length: 1120
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34


Found at i:892 original size:13 final size:13

Alignment explanation


    Indices: 874--900  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

        864 GAATGAGAAG

                         
        874 TCAAAACGGGGCA
          1 TCAAAACGGGGCA

                         
        887 TCAAAACGGGGCA
          1 TCAAAACGGGGCA

             
        900 T
          1 T

        901 TGATGTTTGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.37, C:0.22, G:0.30, T:0.11


Consensus pattern (13 bp):   
TCAAAACGGGGCA
Done.