Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g00998.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 930

Length: 1550
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25


Found at i:1464 original size:38 final size:39

Alignment explanation


    Indices: 1412--1487  Score: 127
    Period size: 38  Copynumber: 2.0  Consensus size: 39

       1402 GCATGTTAGT

                  *                                
       1412 GAGAATGGTTTTCTATTAAAATGAGAAAGAATTGAATAC
          1 GAGAATAGTTTTCTATTAAAATGAGAAAGAATTGAATAC

                                    *             
       1451 GAGAATAG-TTTCTATTAAAATGATAAAGAATTGAATA
          1 GAGAATAGTTTTCTATTAAAATGAGAAAGAATTGAATA

       1488 GCTTAAAAAG


Statistics
Matches: 35,  Mismatches: 2, Indels: 1
        0.92            0.05        0.03

Matches are distributed among these distances:
  38   28  0.80
  39    7  0.20

ACGTcount: A:0.46, C:0.04, G:0.18, T:0.32


Consensus pattern (39 bp):   
GAGAATAGTTTTCTATTAAAATGAGAAAGAATTGAATAC
Done.