Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01017.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2551
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30


Found at i:196 original size:8 final size:8

Alignment explanation


    Indices: 183--208  Score: 52
    Period size: 8  Copynumber: 3.2  Consensus size: 8

        173 TATATTTGAA

                    
        183 GAAGAAAG
          1 GAAGAAAG

                    
        191 GAAGAAAG
          1 GAAGAAAG

                    
        199 GAAGAAAG
          1 GAAGAAAG

              
        207 GA
          1 GA

        209 GGCAGGAATA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   18  1.00

ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00


Consensus pattern (8 bp):   
GAAGAAAG

Found at i:2255 original size:22 final size:22

Alignment explanation


    Indices: 2227--2286  Score: 120
    Period size: 22  Copynumber: 2.7  Consensus size: 22

       2217 ATTGCCAAAA

                                  
       2227 GGGAGGGAAAAGGGGGTTTCCC
          1 GGGAGGGAAAAGGGGGTTTCCC

                                  
       2249 GGGAGGGAAAAGGGGGTTTCCC
          1 GGGAGGGAAAAGGGGGTTTCCC

                            
       2271 GGGAGGGAAAAGGGGG
          1 GGGAGGGAAAAGGGGG

       2287 CTTCTCATTG


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   38  1.00

ACGTcount: A:0.25, C:0.10, G:0.55, T:0.10


Consensus pattern (22 bp):   
GGGAGGGAAAAGGGGGTTTCCC
Done.