Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01020.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 525

Length: 875
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29


Found at i:572 original size:6 final size:6

Alignment explanation


    Indices: 561--614  Score: 108
    Period size: 6  Copynumber: 9.0  Consensus size: 6

        551 GTGGTGGAGT

                                                                   
        561 TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG
          1 TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG

                  
        609 TGATGG
          1 TGATGG

        615 GAGTTTTGGT


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   48  1.00

ACGTcount: A:0.17, C:0.00, G:0.50, T:0.33


Consensus pattern (6 bp):   
TGATGG

Done.