Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01022.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6140
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.31


Found at i:5955 original size:21 final size:21

Alignment explanation


    Indices: 5929--5976  Score: 78
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       5919 TCAACTTAGA

                          *      
       5929 GCGGAGGCAGCAGCGAGGGAG
          1 GCGGAGGCAGCAGCAAGGGAG

                   *             
       5950 GCGGAGGTAGCAGCAAGGGAG
          1 GCGGAGGCAGCAGCAAGGGAG

                  
       5971 GCGGAG
          1 GCGGAG

       5977 CAGAACAGGA


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  21   25  1.00

ACGTcount: A:0.25, C:0.17, G:0.56, T:0.02


Consensus pattern (21 bp):   
GCGGAGGCAGCAGCAAGGGAG
Done.