Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01035.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2611
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.39


Found at i:1063 original size:37 final size:37

Alignment explanation


    Indices: 1022--1092  Score: 142
    Period size: 37  Copynumber: 1.9  Consensus size: 37

       1012 TAATTGTCTT

                                                 
       1022 TTATGATTCGAAATTGGAGAATGTGTGGGATTTGATG
          1 TTATGATTCGAAATTGGAGAATGTGTGGGATTTGATG

                                              
       1059 TTATGATTCGAAATTGGAGAATGTGTGGGATTTG
          1 TTATGATTCGAAATTGGAGAATGTGTGGGATTTG

       1093 GTTGGTGTAT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  37   34  1.00

ACGTcount: A:0.27, C:0.03, G:0.32, T:0.38


Consensus pattern (37 bp):   
TTATGATTCGAAATTGGAGAATGTGTGGGATTTGATG
Done.