Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01037.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 797

Length: 1329
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30


Found at i:1090 original size:11 final size:11

Alignment explanation


    Indices: 1061--1092  Score: 55
    Period size: 11  Copynumber: 2.9  Consensus size: 11

       1051 ATAAAAAGGG

                   *   
       1061 TTTTTTTGTTC
          1 TTTTTTTTTTC

                       
       1072 TTTTTTTTTTC
          1 TTTTTTTTTTC

                      
       1083 TTTTTTTTTT
          1 TTTTTTTTTT

       1093 GTTGTTGAGA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  11   20  1.00

ACGTcount: A:0.00, C:0.06, G:0.03, T:0.91


Consensus pattern (11 bp):   
TTTTTTTTTTC
Done.