Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00791.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5009
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36


Found at i:1644 original size:10 final size:10

Alignment explanation


    Indices: 1631--1656  Score: 52
    Period size: 10  Copynumber: 2.6  Consensus size: 10

       1621 TTTTCATGAC

                      
       1631 TTTTATAATA
          1 TTTTATAATA

                      
       1641 TTTTATAATA
          1 TTTTATAATA

                  
       1651 TTTTAT
          1 TTTTAT

       1657 TTTTTTTAAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   16  1.00

ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65


Consensus pattern (10 bp):   
TTTTATAATA

Found at i:3054 original size:60 final size:60

Alignment explanation


    Indices: 2961--3082  Score: 217
    Period size: 60  Copynumber: 2.0  Consensus size: 60

       2951 GTGTTTCCAG

                                                              *         
       2961 GTTAGCTCAGGTTGGAGTTCGTCGGAGATATTATCACACTGTCAAGCTATTGCTATTGGT
          1 GTTAGCTCAGGTTGGAGTTCGTCGGAGATATTATCACACTGTCAAGCTATCGCTATTGGT

                    *          *                                        
       3021 GTTAGCTCGGGTTGGAGTTTGTCGGAGATATTATCACACTGTCAAGCTATCGCTATTGGT
          1 GTTAGCTCAGGTTGGAGTTCGTCGGAGATATTATCACACTGTCAAGCTATCGCTATTGGT

              
       3081 GT
          1 GT

       3083 AAGTGATTTC


Statistics
Matches: 59,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  60   59  1.00

ACGTcount: A:0.20, C:0.16, G:0.28, T:0.35


Consensus pattern (60 bp):   
GTTAGCTCAGGTTGGAGTTCGTCGGAGATATTATCACACTGTCAAGCTATCGCTATTGGT
Done.