Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00791.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 546

Length: 910
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.32


Found at i:528 original size:60 final size:60

Alignment explanation


    Indices: 454--573  Score: 213
    Period size: 60  Copynumber: 2.0  Consensus size: 60

        444 GTGTTTCCAG

                                                              *         
        454 GTTAGCTCAGGTTGGAGTTCGTCGGAGATATTATCACACTGTCAAGCTATTGCTATTGGT
          1 GTTAGCTCAGGTTGGAGTTCGTCGGAGATATTATCACACTGTCAAGCTATCGCTATTGGT

                    *          *                                        
        514 GTTAGCTCGGGTTGGAGTTTGTCGGAGATATTATCACACTGTCAAGCTATCGCTATTGGT
          1 GTTAGCTCAGGTTGGAGTTCGTCGGAGATATTATCACACTGTCAAGCTATCGCTATTGGT

        574 TGTTGACAAG


Statistics
Matches: 57,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  60   57  1.00

ACGTcount: A:0.21, C:0.17, G:0.28, T:0.35


Consensus pattern (60 bp):   
GTTAGCTCAGGTTGGAGTTCGTCGGAGATATTATCACACTGTCAAGCTATCGCTATTGGT
Done.