Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01055.M2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3328
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:2265 original size:43 final size:43

Alignment explanation


    Indices: 2204--2301  Score: 160
    Period size: 43  Copynumber: 2.3  Consensus size: 43

       2194 TTAAATTTCA

                  *            **                      
       2204 TGACCTATAGCGGCGTTTGTTGGAAAAGCGCCGCCAAAGGTCC
          1 TGACCTTTAGCGGCGTTTGGGGGAAAAGCGCCGCCAAAGGTCC

                    *                                  
       2247 TGACCTTTGGCGGCGTTTGGGGGAAAAGCGCCGCCAAAGGTCC
          1 TGACCTTTAGCGGCGTTTGGGGGAAAAGCGCCGCCAAAGGTCC

                        
       2290 TGACCTTTAGCG
          1 TGACCTTTAGCG

       2302 ACGTGTTTTC


Statistics
Matches: 50,  Mismatches: 5, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  43   50  1.00

ACGTcount: A:0.20, C:0.26, G:0.33, T:0.21


Consensus pattern (43 bp):   
TGACCTTTAGCGGCGTTTGGGGGAAAAGCGCCGCCAAAGGTCC
Done.