Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01079.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6096
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31


Found at i:1446 original size:42 final size:42

Alignment explanation


    Indices: 1384--1470  Score: 129
    Period size: 42  Copynumber: 2.1  Consensus size: 42

       1374 CTAATTGGGT

                           *           *     *        
       1384 AAATAGTTCCCTTATTCTAATAAACTATTAAAATATAAAAGA
          1 AAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAAGA

                         *                          * 
       1426 AAATAGTTCCCTTGTCCTAATAAACTACTAAAAGATAAAATA
          1 AAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAAGA

               
       1468 AAA
          1 AAA

       1471 ATATTCCTAG


Statistics
Matches: 40,  Mismatches: 5, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  42   40  1.00

ACGTcount: A:0.51, C:0.14, G:0.06, T:0.30


Consensus pattern (42 bp):   
AAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAAGA

Found at i:1517 original size:19 final size:18

Alignment explanation


    Indices: 1495--1534  Score: 71
    Period size: 19  Copynumber: 2.2  Consensus size: 18

       1485 TGAATAAAAC

                               
       1495 TTATCTACCTAAATAAGAT
          1 TTATCTACCTAAATAA-AT

                              
       1514 TTATCTACCTAAATAAAT
          1 TTATCTACCTAAATAAAT

               
       1532 TTA
          1 TTA

       1535 AAATATATAC


Statistics
Matches: 21,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  18    5  0.24
  19   16  0.76

ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40


Consensus pattern (18 bp):   
TTATCTACCTAAATAAAT
Done.