Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01087.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 382

Length: 637
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30


Found at i:112 original size:15 final size:15

Alignment explanation


    Indices: 92--122  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

         82 GGCACCAAAG

                    *      
         92 GCCGAGAAGAAGCCT
          1 GCCGAGAAAAAGCCT

                           
        107 GCCGAGAAAAAGCCT
          1 GCCGAGAAAAAGCCT

             
        122 G
          1 G

        123 TAGCAGAGAA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.35, C:0.26, G:0.32, T:0.06


Consensus pattern (15 bp):   
GCCGAGAAAAAGCCT
Done.