Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01096.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 490

Length: 817
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.34


Found at i:132 original size:33 final size:33

Alignment explanation


    Indices: 90--154  Score: 103
    Period size: 33  Copynumber: 2.0  Consensus size: 33

         80 ACTTTACCCT

                                             
         90 TCCATTTCTTTCTCACGTCTAGACCTTTCTTCA
          1 TCCATTTCTTTCTCACGTCTAGACCTTTCTTCA

                              * *  *        
        123 TCCATTTCTTTCTCACGTGTGGAGCTTTCTTC
          1 TCCATTTCTTTCTCACGTCTAGACCTTTCTTC

        155 TTTTCTTCAT


Statistics
Matches: 29,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  33   29  1.00

ACGTcount: A:0.12, C:0.31, G:0.11, T:0.46


Consensus pattern (33 bp):   
TCCATTTCTTTCTCACGTCTAGACCTTTCTTCA
Done.