Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01099.N4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2655
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36


Found at i:579 original size:37 final size:37

Alignment explanation


    Indices: 534--613  Score: 115
    Period size: 37  Copynumber: 2.2  Consensus size: 37

        524 AGGCTAGGCA

                     *                   **      
        534 CGTGTTATTTGTTGGATTAGCTCTCATGATTGTTTGG
          1 CGTGTTATTGGTTGGATTAGCTCTCATGAGCGTTTGG

                                    *            
        571 CGTGTTATTGGTTGGATTAGCTCTTATGAGCGTTTGG
          1 CGTGTTATTGGTTGGATTAGCTCTCATGAGCGTTTGG

            *     
        608 TGTGTT
          1 CGTGTT

        614 TTCATTGAAC


Statistics
Matches: 38,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  37   38  1.00

ACGTcount: A:0.12, C:0.10, G:0.30, T:0.47


Consensus pattern (37 bp):   
CGTGTTATTGGTTGGATTAGCTCTCATGAGCGTTTGG
Done.