Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01101.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3420
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.27


Found at i:2893 original size:51 final size:51

Alignment explanation


    Indices: 2810--2952  Score: 180
    Period size: 51  Copynumber: 2.8  Consensus size: 51

       2800 TCAACGATGG

                 *                 *   *                 *      
       2810 TTTCAGGGTGGGAT-TCATGCTTTCACTCCGGGGACTCAACCACTTGGCCAA
          1 TTTCACGGTGGGATCT-ATGCTTCCACACCGGGGACTCAACCACTAGGCCAA

                                       *                   *  *
       2861 TTTCACGGTGGGATCTATGCTTCCACAGCGGGGACTCAACCACTAGGGCAG
          1 TTTCACGGTGGGATCTATGCTTCCACACCGGGGACTCAACCACTAGGCCAA

            *               *                *       
       2912 CTTCACGGTGGGATCTTTGCTTCCACACCGGGGGCTCAACC
          1 TTTCACGGTGGGATCTATGCTTCCACACCGGGGACTCAACC

       2953 GCAAGAGCTA


Statistics
Matches: 80,  Mismatches: 11, Indels: 2
        0.86            0.12        0.02

Matches are distributed among these distances:
  51   79  0.99
  52    1  0.01

ACGTcount: A:0.19, C:0.29, G:0.27, T:0.24


Consensus pattern (51 bp):   
TTTCACGGTGGGATCTATGCTTCCACACCGGGGACTCAACCACTAGGCCAA
Done.