Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00398.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3452
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.33


Found at i:3238 original size:53 final size:53

Alignment explanation


    Indices: 3153--3258  Score: 203
    Period size: 53  Copynumber: 2.0  Consensus size: 53

       3143 TTACGACCTG

                *                                                
       3153 GTTGTCTTTTTATATGTTTGGTGTCTGCATTATCTATCTTGAGCTCAGATGAT
          1 GTTGCCTTTTTATATGTTTGGTGTCTGCATTATCTATCTTGAGCTCAGATGAT

                                                                 
       3206 GTTGCCTTTTTATATGTTTGGTGTCTGCATTATCTATCTTGAGCTCAGATGAT
          1 GTTGCCTTTTTATATGTTTGGTGTCTGCATTATCTATCTTGAGCTCAGATGAT

       3259 TTTTGTCGGT


Statistics
Matches: 52,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  53   52  1.00

ACGTcount: A:0.17, C:0.14, G:0.21, T:0.48


Consensus pattern (53 bp):   
GTTGCCTTTTTATATGTTTGGTGTCTGCATTATCTATCTTGAGCTCAGATGAT
Done.