Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01106.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2703
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31


Found at i:336 original size:58 final size:58

Alignment explanation


    Indices: 267--388  Score: 217
    Period size: 58  Copynumber: 2.1  Consensus size: 58

        257 AAACACTACG

                                 **       *                           
        267 TTTTTCCATCTGTTCTTCATTGGAAACCAAGCTATCTTTTCTTACACCTTATTGGGGT
          1 TTTTTCCATCTGTTCTTCATTCAAAACCAAACTATCTTTTCTTACACCTTATTGGGGT

                                                                      
        325 TTTTTCCATCTGTTCTTCATTCAAAACCAAACTATCTTTTCTTACACCTTATTGGGGT
          1 TTTTTCCATCTGTTCTTCATTCAAAACCAAACTATCTTTTCTTACACCTTATTGGGGT

                  
        383 TTTTTC
          1 TTTTTC

        389 AGACCTTCAT


Statistics
Matches: 61,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  58   61  1.00

ACGTcount: A:0.20, C:0.23, G:0.11, T:0.47


Consensus pattern (58 bp):   
TTTTTCCATCTGTTCTTCATTCAAAACCAAACTATCTTTTCTTACACCTTATTGGGGT
Done.