Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01116.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5883
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30


Found at i:3037 original size:6 final size:6

Alignment explanation


    Indices: 3023--3053  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

       3013 TTAAGCCCAT

                *                               
       3023 TACAAA TACAGA TACAGA TACAGA TACAGA T
          1 TACAGA TACAGA TACAGA TACAGA TACAGA T

       3054 GTACAAACCA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.52, C:0.16, G:0.13, T:0.19


Consensus pattern (6 bp):   
TACAGA

Done.