Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01135.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6764
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.31


Found at i:5482 original size:41 final size:41

Alignment explanation


    Indices: 5391--5474  Score: 152
    Period size: 41  Copynumber: 2.1  Consensus size: 41

       5381 AAGGTGTTAG

                            *                        
       5391 AAATGTTGTCAAATATTTCATGTCTTACTTTGTATCCTAGA
          1 AAATGTTGTCAAATATCTCATGTCTTACTTTGTATCCTAGA

                                                     
       5432 AAATGTTGTCAAATATCTCATGTCTTACTTTGTATCCTA-A
          1 AAATGTTGTCAAATATCTCATGTCTTACTTTGTATCCTAGA

               
       5472 AAA
          1 AAA

       5475 GCTTTGTCTT


Statistics
Matches: 42,  Mismatches: 1, Indels: 1
        0.95            0.02        0.02

Matches are distributed among these distances:
  40    4  0.10
  41   38  0.90

ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42


Consensus pattern (41 bp):   
AAATGTTGTCAAATATCTCATGTCTTACTTTGTATCCTAGA
Done.