Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01138.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 316

Length: 528
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30


Found at i:415 original size:30 final size:30

Alignment explanation


    Indices: 380--436  Score: 114
    Period size: 30  Copynumber: 1.9  Consensus size: 30

        370 CCGATGGCCA

                                          
        380 AGCTTAGCAGCTCAAGTGGTGTTTCAAACC
          1 AGCTTAGCAGCTCAAGTGGTGTTTCAAACC

                                       
        410 AGCTTAGCAGCTCAAGTGGTGTTTCAA
          1 AGCTTAGCAGCTCAAGTGGTGTTTCAA

        437 GGTTTGGGTC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   27  1.00

ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28


Consensus pattern (30 bp):   
AGCTTAGCAGCTCAAGTGGTGTTTCAAACC
Done.