Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01155.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1712
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36


Found at i:1602 original size:26 final size:26

Alignment explanation


    Indices: 1571--1622  Score: 95
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1561 GCAAAATATG

                                      
       1571 TATTTCTACTATTTAATTATTGAATT
          1 TATTTCTACTATTTAATTATTGAATT

                    *                 
       1597 TATTTCTATTATTTAATTATTGAATT
          1 TATTTCTACTATTTAATTATTGAATT

       1623 AAATTTATAT


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   25  1.00

ACGTcount: A:0.31, C:0.06, G:0.04, T:0.60


Consensus pattern (26 bp):   
TATTTCTACTATTTAATTATTGAATT
Done.