Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01161.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3144
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38


Found at i:737 original size:73 final size:73

Alignment explanation


    Indices: 617--764  Score: 251
    Period size: 73  Copynumber: 2.0  Consensus size: 73

        607 GTTAATTGAT

                                           *          *                      
        617 TTACTTTAGATAAGATCTCTTTAAAGGTTACTATCTATGTGATTGCTGGTCGAAGTTTCTCTTGA
          1 TTACTTTAGATAAGATCTCTTTAAAGGTTACCATCTATGTGAGTGCTGGTCGAAGTTTCTCTTGA

                    
        682 AAAGCACA
         66 AAAGCACA

                                    *    *                    *              
        690 TTACTTTAGATAAGATCTCTTTAAGGGTTGCCATCTATGTGAGTGCTGGTTGAAGTTTCTCTTGA
          1 TTACTTTAGATAAGATCTCTTTAAAGGTTACCATCTATGTGAGTGCTGGTCGAAGTTTCTCTTGA

                    
        755 AAAGCACA
         66 AAAGCACA

              
        763 TT
          1 TT

        765 GATATTTTAA


Statistics
Matches: 70,  Mismatches: 5, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  73   70  1.00

ACGTcount: A:0.27, C:0.15, G:0.20, T:0.39


Consensus pattern (73 bp):   
TTACTTTAGATAAGATCTCTTTAAAGGTTACCATCTATGTGAGTGCTGGTCGAAGTTTCTCTTGA
AAAGCACA
Done.