Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01165.F8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3805
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33


Found at i:3353 original size:18 final size:18

Alignment explanation


    Indices: 3326--3372  Score: 58
    Period size: 18  Copynumber: 2.6  Consensus size: 18

       3316 GCCCATACCT

                 *       *    
       3326 GACACAAGTCACGGCCAC
          1 GACACTAGTCACGCCCAC

                      *       
       3344 GACACTAGTCGCGCCCAC
          1 GACACTAGTCACGCCCAC

               *       
       3362 GACTCTAGTCA
          1 GACACTAGTCA

       3373 AGATAGAGAG


Statistics
Matches: 24,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  18   24  1.00

ACGTcount: A:0.28, C:0.38, G:0.21, T:0.13


Consensus pattern (18 bp):   
GACACTAGTCACGCCCAC
Done.