Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00807.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 407

Length: 679
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.35


Found at i:479 original size:28 final size:28

Alignment explanation


    Indices: 439--494  Score: 103
    Period size: 28  Copynumber: 2.0  Consensus size: 28

        429 GATAAAATTC

                                        
        439 TAAGTATGTCGCAACGCGTTCAGCCTTT
          1 TAAGTATGTCGCAACGCGTTCAGCCTTT

                 *                      
        467 TAAGTGTGTCGCAACGCGTTCAGCCTTT
          1 TAAGTATGTCGCAACGCGTTCAGCCTTT

        495 ACTACCTGTC


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  28   27  1.00

ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32


Consensus pattern (28 bp):   
TAAGTATGTCGCAACGCGTTCAGCCTTT
Done.